{"name":"napari-annotator","display_name":"Annotator","visibility":"public","icon":"","categories":["Annotation"],"schema_version":"0.2.1","on_activate":null,"on_deactivate":null,"contributions":{"commands":[{"id":"napari-annotator.annotator","title":"Annotator","python_name":"napari_annotator._dock_widget:Annotator","short_title":null,"category":null,"icon":null,"enablement":null}],"readers":null,"writers":null,"widgets":[{"command":"napari-annotator.annotator","display_name":"Annotator","autogenerate":false}],"sample_data":null,"themes":null,"menus":{},"submenus":null,"keybindings":null,"configuration":[]},"package_metadata":{"metadata_version":"2.1","name":"napari-annotator","version":"0.1.1","dynamic":null,"platform":null,"supported_platform":null,"summary":"A lightweight plugin extending label layer control","description":"# napari-annotator\n\n[![License BSD-3](https://img.shields.io/pypi/l/napari-annotator.svg?color=green)](https://github.com/loicsauteur/napari-annotator/raw/main/LICENSE)\n[![PyPI](https://img.shields.io/pypi/v/napari-annotator.svg?color=green)](https://pypi.org/project/napari-annotator)\n[![Python Version](https://img.shields.io/pypi/pyversions/napari-annotator.svg?color=green)](https://python.org)\n[![tests](https://github.com/loicsauteur/napari-annotator/workflows/tests/badge.svg)](https://github.com/loicsauteur/napari-annotator/actions)\n[![codecov](https://codecov.io/gh/loicsauteur/napari-annotator/branch/main/graph/badge.svg)](https://codecov.io/gh/loicsauteur/napari-annotator)\n[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/napari-annotator)](https://napari-hub.org/plugins/napari-annotator)\n\nA lightweight plugin extending label layer control.\n\n----------------------------------\n\nThis [napari] plugin was generated with [copier] using the [napari-plugin-template].\n\n<!--\nDon't miss the full getting started guide to set up your new package:\nhttps://github.com/napari/napari-plugin-template#getting-started\n\nand review the napari docs for plugin developers:\nhttps://napari.org/stable/plugins/index.html\n-->\n## Description\nThis lightweight plugin helps you navigate your labels layer. It is intended to ease your manual annotation work.\n![Overview image](resources/image1.png)\n- Select a label from the list.\n- Toggle the visibility of individual label entries.\n- Move to the centroid of a label at the current zoom.\n- Change the color of individual labels.\n- Erase all drawn pixels of a given label.\n- Restore an erased label.\n\nVersion >=0.1.0 works for napari version >= 0.5.5\n\nVersion <0.1.0 should work for napari version < 0.4.19\n\n## Usage\nStart the plugin `Plugins > Annotator (Annotator)`.\n\nThe plugin will list available labels once a labels layer is selected and labels drawn.\n\nColor shuffling for labels will not work, since the plugin sets the color mode of the layer to `direct`.\nBut you can always change the color of individual labels, using the color picker.\n\n## Known limitations\n1. Locating / moving to the center of a label only works on 2D/3D label layers, i.e.:\n   1. single- / multi-channel 2D label layers.\n   2. single-channel 3D label layers (the third dimension being either Z or T).\n2. (Theoretical) maximum of 20'000 labels supported.\n<!-- increasing the number is possible, but will introduce bigger lag, as each color/visibility change re-creates the colormap.-->\n3. Restoring an erased labels is lost after switching between layers.\n\n\n\n\n## Installation\n\nYou can install `napari-annotator` via [pip]:\n\n    pip install napari-annotator\n\n\nTo install latest development version :\n\n    pip install git+https://github.com/loicsauteur/napari-annotator.git\n\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n\"napari-annotator\" is free and open source software.\n\n## Issues\n\nIf you encounter any problems, please [file an issue] along with a detailed description.\nOr open a thread on [forum.image.sc](https://forum.image.sc) with a detailed description\nand a [@loicsauteur](https://github.com/loicsauteur) tag.\n\n\n[napari]: https://github.com/napari/napari\n[copier]: https://copier.readthedocs.io/en/stable/\n[@napari]: https://github.com/napari\n[MIT]: http://opensource.org/licenses/MIT\n[BSD-3]: http://opensource.org/licenses/BSD-3-Clause\n[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt\n[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt\n[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0\n[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt\n[napari-plugin-template]: https://github.com/napari/napari-plugin-template\n\n[file an issue]: https://github.com/loicsauteur/napari-annotator/issues\n\n[napari]: https://github.com/napari/napari\n[tox]: https://tox.readthedocs.io/en/latest/\n[pip]: https://pypi.org/project/pip/\n[PyPI]: https://pypi.org/\n","description_content_type":"text/markdown","keywords":null,"home_page":null,"download_url":null,"author":"Loïc Sauteur","author_email":"loic.sauteur@unibas.ch","maintainer":null,"maintainer_email":null,"license":"Copyright (c) 2025, Loïc Sauteur\nAll rights reserved.\n\nRedistribution and use in source and binary forms, with or without\nmodification, are permitted provided that the following conditions are met:\n\n* Redistributions of source code must retain the above copyright notice, this\n  list of conditions and the following disclaimer.\n\n* Redistributions in binary form must reproduce the above copyright notice,\n  this list of conditions and the following disclaimer in the documentation\n  and/or other materials provided with the distribution.\n\n* Neither the name of copyright holder nor the names of its\n  contributors may be used to endorse or promote products derived from\n  this software without specific prior written permission.\n\nTHIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS \"AS IS\"\nAND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE\nIMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE\nDISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE\nFOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL\nDAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR\nSERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER\nCAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,\nOR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE\nOF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.\n","classifier":["Development Status :: 2 - Pre-Alpha","Framework :: napari","Intended Audience :: Developers","License :: OSI Approved :: BSD License","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.9","Programming Language :: Python :: 3.10","Programming Language :: Python :: 3.11","Programming Language :: Python :: 3.12","Topic :: Scientific/Engineering :: Image Processing"],"requires_dist":["numpy","magicgui","qtpy","scikit-image","napari>=0.5.5","tox; extra == \"testing\"","pytest; extra == \"testing\"","pytest-cov; extra == \"testing\"","pytest-qt; extra == \"testing\"","napari; extra == \"testing\"","pyqt5; extra == \"testing\""],"requires_python":">=3.9","requires_external":null,"project_url":["Bug Tracker, https://github.com/loicsauteur/napari-annotator/issues","Documentation, https://github.com/loicsauteur/napari-annotator#README.md","Source Code, https://github.com/loicsauteur/napari-annotator","User Support, https://github.com/loicsauteur/napari-annotator/issues"],"provides_extra":["testing"],"provides_dist":null,"obsoletes_dist":null},"npe1_shim":false}